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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hbs1l, Hbs1-like (S. cerevisiae)
Sequence ID:NM_001042593
NM_001145209
NM_019702
Entrez Gene ID:56422
Ensembl ID:ENSMUSG00000019977

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 A3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 21307350 - 21368895

 Exon Info From UCSC:
NM_001042593
NM_001145209
NM_019702

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3964560Full LengthBC010251Hbs1-like (S. cerevisiae)
5328213Full LengthBC085235Hbs1-like (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062676  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042593 NP_001036058    
NM_001145209 NP_001138681    
NM_019702 NP_062676 Q69ZS7 GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2

Related Sequences

 
mRNAGenPeptSwissProt
AF087672 AAD23351 Q69ZS7
BC010251 AAH10251 Q69ZS7
BC085235 AAH85235 Q5U477
AK006626 BAB24679 Q69ZS7
AK012856 BAB28515 Q69ZS7
AK173091 BAD32369 Q69ZS7
AK146678 BAE27353 Q3UJ02
AK166140 BAE38593 Q3TGM7
AK168671 BAE40521 Q3TGM7
AK169281 BAE41039 Q3TGM7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hbs1l NP_001036058 R.norvegicus Hbs1l 293408   NP_001011934 97
H.sapiens HBS1L 10767 Gene Info NP_006611 90
A.gambiae AgaP_AGAP002603 1273366   XP_312333 52
D.melanogaster HBS1 117365   NP_652729 50
C.elegans K07A12.4 172672   NP_001021555 49
N.crassa NCU03981 3872713   XP_956566 46
A.thaliana AT5G10630 830928   NP_001190282 42
S.cerevisiae HBS1 853959   NP_013010 40
S.pombe SPBC25B2.01 2540430   NP_596069 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)