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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sec22b, SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
Sequence ID:NM_011342
Entrez Gene ID:20333
Ensembl ID:ENSMUSG00000027879

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.2|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 97921425 - 97921862

NM_011342 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11949770514997705342
1953049771114397711252
3054659771650197716661
4666129771842297718568
61318159772503897726240

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3481731Full LengthBC009024SEC22 vesicle trafficking protein homolog B (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035472  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011342 NP_035472 O08547 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
U91538 AAC53130 O08547
BC009024 AAH09024 O08547
AK017237 BAB30646 O08547
AK034973 BAC28899 O08547
AK037918 BAC29901 O08547
AK088514 BAC40397 O08547
AK089928 BAC40999 O08547
AK134215 BAE22055 Q3UZ06

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sec22b NP_035472 R.norvegicus Sec22b 310710   NP_001020857 100
H.sapiens SEC22B 9554 Gene Info NP_004883 98
A.gambiae AgaP_AGAP012717 1269056   XP_307637 58
D.melanogaster Sec22 31030   NP_569863 58
C.elegans F55A4.1 180456   NP_508198 50
A.thaliana SEC22 837737   NP_172653 49
S.cerevisiae SEC22 850973   NP_013370 41
S.pombe sec22 2540308   NP_596218 41
N.crassa NCU06708 3877050   XP_960888 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)