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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Upk1a, uroplakin 1A
Sequence ID:NM_026815
Entrez Gene ID:109637
Ensembl ID:ENSMUSG00000006313

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 B1|7 10.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 30603597 - 30612467

NM_026815 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15513138811031388660
5526353138879031388873
6368153139007931390258
8169233139189331392000
9249983139214931392223
99911993139463231394832
120012873139740531397492

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861410Full LengthBC138390uroplakin 1A
40130324Full LengthBC132047uroplakin 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081091  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026815 NP_081091 Q9D132 Tetraspannin

Related Sequences

 
mRNAGenPeptSwissProt
BC132047 AAI32048 A2RSB9
BC138390 AAI38391 A2RSB9
AF262335 AAM08129 Q9D132
AK004014 BAB23125 Q9D132

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Upk1a NP_081091 R.norvegicus Upk1a 365227   NP_001102381 98
H.sapiens UPK1A 11045 Gene Info NP_008931 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)