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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. H2-Ab1, Histocompatibility 2, class II antigen A, beta 1
Sequence ID:NM_207105
Entrez Gene ID:14961
Ensembl ID:ENSMUSG00000073421

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.64

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34263317 - 34268034

NM_207105 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11793440017134400349
1804523440170534401977
4537343440428034404561
7358453440486734404977
8468693440540534405428
87011933440603934406362

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651058Full LengthBC010322histocompatibility 2, class II antigen A, beta 1
3257494Full LengthBC008168histocompatibility 2, class II antigen A, beta 1
5340289Full LengthBC057998histocompatibility 2, class II antigen A, beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_996988  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_207105 NP_996988 Q8BPA0
P14483
MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M66213 AAA20652 Q31187
K01143 AAA39545 P01921
M15848 AAA39547 Q31135
M13541 AAA39629 P06346
M13538 AAA39632 P06343
M13537 AAA39633 P06342
M13540 AAA39634 P06345
M13539 AAA39635 Q31184
M21932 AAA39637 O19470
AF065912 AAC17910 O62867
AF065913 AAC17911 O78197
AF119251 AAD31754 Q9TNN5
AF119252 AAD31755 Q9TNN5
BC008168 AAH08168 Q31135
BC010322 AAH10322 Q95I79
BC057998 AAH57998 Q31187
AY303784 AAP69831 Q7YQ02
AY303785 AAP69832 Q7YQ01
AY452202 AAR19090 Q6SR47
AK077436 BAC36800 Q8BPA0
AK155573 BAE33331 Q31135
AK156899 BAE33890 Q31135
AK170370 BAE41751 Q3TD53
P14483
AK171005 BAE42176 Q31135
AK171211 BAE42316 Q31135
AK171281 BAE42364 Q31135
AK171290 BAE42372 Q3TBE1
AK171298 BAE42377 Q3TBD6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Ab1 NP_996988 R.norvegicus RT1-Bb 309622   NP_001004084 86
H.sapiens HLA-DQB1 3119 Gene Info NP_002114 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)