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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cpa1, carboxypeptidase A1, pancreatic
Sequence ID:NM_025350
Entrez Gene ID:109697
Ensembl ID:ENSMUSG00000054446

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B1|6 6.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 30639440 - 30645360

NM_025350 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13083058922030589527
3093903058998130590062
3916243059050730590740
6257263059089230590993
7278283059149130591592
8299393059176330591873
94010303059229730592387
103112303059286130593060
123113153059354330593627
131615783059509830595360

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30050094Full LengthBC052661carboxypeptidase A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079626  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_025350 NP_079626 Q7TPZ8 EC 3.4.17.1 Peptidase_M14
Propep_M14

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC052661 AAH52661 Q7TPZ8 EC 3.4.17.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpa1 NP_079626 R.norvegicus Cpa1 24269   NP_058694 93
H.sapiens CPA1 1357 Gene Info NP_001859 82
A.gambiae CBPA1_ANOGA 1278958   XP_318615 37
D.melanogaster CG17633 34297   NP_609310 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)