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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Actn1, actinin, alpha 1
Sequence ID:NM_134156
Entrez Gene ID:109711
Ensembl ID:ENSMUSG00000015143

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C3|12 35.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 80190582 - 80194443

 Exon Info From UCSC:
NM_134156

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6308412Full LengthBC054830actinin, alpha 1
3483627IncompleteBC003232actinin, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598917  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_134156 NP_598917 Q7TPR4 efhand
CH
Spectrin

Related Sequences

 
mRNAGenPeptSwissProt
AF031663 AAC72014 Q9Z2R2
BC003232 AAH03232 Q99LJ3
BC054830 AAH54830 Q7TPR4
DQ288940 ABB88726 A1BN54
XM_003084907 XP_003084955  
XM_003085824 XP_003085872  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Actn1 NP_598917 H.sapiens ACTN1 87 Gene Info NP_001123476 99
R.norvegicus Actn1 81634   NP_112267 99
D.melanogaster Actn 31166   NP_477485 70
A.gambiae ACTN_ANOGA 1281675   XP_321625 70
C.elegans atn-1 179709   NP_506128 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)