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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc38a10, solute carrier family 38, member 10
Sequence ID:NM_001164798
NM_001164799
NM_001164800
NM_001164801
NM_001164802
NM_024249
Entrez Gene ID:72055
Ensembl ID:ENSMUSG00000061306

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 120118871 - 120151240

 Exon Info From UCSC:
NM_001164798
NM_001164799
NM_001164800
NM_001164801
NM_001164802
NM_024249

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6493546Full LengthBC088811solute carrier family 38, member 10
30362204Full LengthBC082300solute carrier family 38, member 10
3708675IncompleteBC005641solute carrier family 38, member 10
4488518IncompleteBC055017solute carrier family 38, member 10
4981243IncompleteBC043299solute carrier family 38, member 10
5011722IncompleteBC023375solute carrier family 38, member 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077211  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164798 NP_001158270    
NM_001164799 NP_001158271    
NM_001164800 NP_001158272    
NM_001164801 NP_001158273    
NM_001164802 NP_001158274    
NM_024249 NP_077211 Q5I012 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC005641 AAH05641 Q99JV6
BC023375 AAH23375 Q8R3Y3
BC043299 AAH43299 Q5I012
BC055017 AAH55017 Q7TMR2
BC082300 AAH82300 Q5I012
BC088811 AAH88811 Q5I012
AK007977 BAB25384 Q5I012
AK032245 BAC27777 Q5I012
AK090050 BAC41066 Q5I012
AK159948 BAE35504 Q5I012

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc38a10 NP_001158270 R.norvegicus Slc38a10 303740   XP_002727893 91
H.sapiens SLC38A10 124565 Gene Info NP_001033073 71
D.melanogaster CG30394 37437   NP_611578 36
A.gambiae AgaP_AGAP001923 1281202   XP_321141 33
C.elegans Y51F10.4 245996   NP_001032988 31
A.thaliana AT3G56200 824786   NP_191179 29
A.thaliana AT2G40420 818635   NP_181573 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)