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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc12a5, solute carrier family 12, member 5
Sequence ID:NM_020333
Entrez Gene ID:57138
Ensembl ID:ENSMUSG00000017740

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 G2-G3

Chromosomal Position (from UCSC)

Chromosomal Position:2: 164968317 - 164997693

 Exon Info From UCSC:
NM_020333

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6838880Full LengthBC054808solute carrier family 12, member 5
6402524IncompleteBC057624solute carrier family 12, member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065066  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020333 NP_065066   AA_permease

Related Sequences

 
mRNAGenPeptSwissProt
BC054808 AAH54808 Q91V14
BC057624 AAH57624 Q6PFC8
AF332063 AAK56092 Q91V14
AF332064 AAK56093 Q91V14
AK122460 BAC65742 Q91V14
AK147262 BAE27805 Q91V14
AK165769 BAE38372 Q3TMR9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc12a5 NP_065066 R.norvegicus Slc12a5 171373   NP_599190 100
H.sapiens SLC12A5 57468 Gene Info NP_065759 99
A.thaliana CCC1 839924   NP_174333 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)