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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nckap1, NCK-associated protein 1
Sequence ID:NM_016965
Entrez Gene ID:50884
Ensembl ID:ENSMUSG00000027002

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 C3|2 48.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 80501294 - 80580965

 Exon Info From UCSC:
NM_016965

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3488144IncompleteBC003962NCK-associated protein 1
40110144IncompleteBC127067NCK-associated protein 1
100015272BC148377NCK-associated protein 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016965 NP_058661 P28660  

Related Sequences

 
mRNAGenPeptSwissProt
BC003962 AAH03962 P28660
BC127067 AAI27068 A1L0U6
BC148377 AAI48378  
AK122318 BAC65600 P28660
AK143049 BAE25258 P28660
X61453 CAA43693 P28660
AJ534525 CAD58932 P28660

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nckap1 NP_058661 R.norvegicus Nckap1 58823   NP_113806 100
H.sapiens NCKAP1 10787 Gene Info NP_995314 99
A.gambiae AgaP_AGAP004946 1275758   XP_315044 61
D.melanogaster Hem 40462   NP_524214 61
C.elegans gex-3 178191   NP_502368 42
A.thaliana GRL 818077   NP_181056 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta