Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Plod3, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Sequence ID:NM_011962
Entrez Gene ID:26433
Ensembl ID:ENSMUSG00000004846

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5 80.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 136987616 - 136996539

 Exon Info From UCSC:
NM_011962

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5703967Full LengthBC043047procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
5720686Full LengthBC054734procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036092  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011962 NP_036092 Q9R0E1 EC 1.14.11.4 2OG-FeII_Oxy

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF046783 AAD54618 Q9R0E1 EC 1.14.11.4
BC043047 AAH43047 Q9R0E1 EC 1.14.11.4
BC054734 AAH54734 Q9R0E1 EC 1.14.11.4
AK013195 BAB28704 Q9R0E1 EC 1.14.11.4
AK033360 BAC28246 Q9R0E1 EC 1.14.11.4
AK088948 BAC40669 Q9R0E1 EC 1.14.11.4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Plod3 NP_036092 R.norvegicus Plod3 288583   NP_835202 97
H.sapiens PLOD3 8985 Gene Info NP_001075 92
A.gambiae AgaP_AGAP001507 1281666   XP_321614 48
C.elegans let-268 174564   NP_496170 47
D.melanogaster CG6199 39265   NP_648451 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)