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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col6a1, collagen, type VI, alpha 1
Sequence ID:NM_009933
Entrez Gene ID:12833
Ensembl ID:ENSMUSG00000001119

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B5-C1|10 41.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 76708792 - 76709548

 Exon Info From UCSC:
NM_009933

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069516Full LengthBC172708collagen, type VI, alpha 1
3488924IncompleteBC002194collagen, type VI, alpha 1
100063109BC156500collagen, type VI, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034063  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009933 NP_034063 Q04857 VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC002194 AAH02194 Q99LW4
BC156500 AAI56501  
BC172708 AAI72708  
EF437374 ABS83533 B0LAD9
AK027944 BAC25675 Q8BT34
AK052924 BAC35203 Q8C6Y0
X66405 CAA47032 Q04857
Z18271 CAA79152 Q04857

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col6a1 NP_034063 R.norvegicus Col6a1 294337   XP_215375 97
H.sapiens COL6A1 1291 Gene Info NP_001839 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)