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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Aqp4, aquaporin 4
Sequence ID:NM_009700
Entrez Gene ID:11829
Ensembl ID:ENSMUSG00000024411

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 A1|18 6.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 15393443 - 15403758

NM_009700 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
143361554790215552237
433744171555608715556167
441845821555659915556763
458349971555809615558510
499850821556210815562192

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4985265Full LengthBC024526aquaporin 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033830  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009700 NP_033830 P55088 MIP

Related Sequences

 
mRNAGenPeptSwissProt
U33012 AAA84923 P55088
U48397 AAB41568 P55088
U48398 AAB41569 P55088
U48399 AAB41570 P55088
U88623 AAC53155 P55088
BC024526 AAH24526 Q50H70
P55088
AF469168 AAL73545 P55088
AF469169 AAL73546 Q50H70
P55088
AY484964 AAS21131 Q50H70
AY484965 AAS21132 Q50H70
AY484966 AAS21133 Q50H70
AY728043 AAX07194 Q50H70
AY728044 AAX07195 Q50H70
AY728045 AAX07196 Q50H70
AY803942 AAX31139 Q50H70
AY803943 AAX31140 Q50H70
AY803944 AAX31141 Q50H70
AK045357 BAC32325 Q8BR89
AK044074 BAE43321 Q3V388
CT010362 CAJ18569 P55088

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aqp4 NP_033830 R.norvegicus Aqp4 25293   NP_036957 97
H.sapiens AQP4 361 Gene Info NP_001641 93
A.gambiae AQP_ANOGA 1279812   XP_319584 55
D.melanogaster Drip 36236   NP_523697 47
A.thaliana PIP3 829662   NP_001190920 45
A.thaliana PIP2;8 816186   NP_179277 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)