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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Six4, sine oculis-related homeobox 4
Sequence ID:NM_011382
Entrez Gene ID:20474
Ensembl ID:ENSMUSG00000034460

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C3|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 73103047 - 73113228

NM_011382 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139807420124574205224
398146697420964774210335
467055727421332974214231

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860950Full LengthBC137931sine oculis-related homeobox 4 homolog (Drosophila)
8860953Full LengthBC137934sine oculis-related homeobox 4 homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035512  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011382 NP_035512 Q61321 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
BC137931 AAI37932 Q61321
BC137934 AAI37935 Q61321
D50416 BAA08915 Q61321
D50417 BAA08916 Q61321
D50418 BAA08917 Q61321

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Six4 NP_035512 R.norvegicus Six4 299138   NP_001100209 95
H.sapiens SIX4 51804 Gene Info NP_059116 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)