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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ciita, class II transactivator
Sequence ID:NM_001243760
NM_001243761
NM_007575
Entrez Gene ID:12265
Ensembl ID:ENSMUSG00000022504

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A1|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 10488239 - 10526426


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015714Full LengthBC148699class II transactivator
100014312BC140358class II transactivator

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031601  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001243760 NP_001230689    
NM_001243761 NP_001230690    
NM_007575 NP_031601 Q3U5G4 NACHT

Related Sequences

 
mRNAGenPeptSwissProt
U46562 AAB05004 P79621
U60653 AAB48859 P79621
Q3U5G4
AF042158 AAC34366 P79621
Q3U5G4
AF042159 AAC34367 P79621
AF100709 AAF06838 P79621
AF100710 AAF06839 P79621
BC107330 AAI07331 Q3KNE0
BC107331 AAI07332 Q3KND9
BC140358 AAI40359  
BC148699 AAI48700  
AK040723 BAC30683 Q8HW99
AK138822 BAE23789 Q3UU40
AK143956 BAE25629 Q3UNW8
AK153609 BAE32115 Q3U5G4
AK155184 BAE33100 Q3U2P0
AK155311 BAE33182 Q3U2F8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ciita NP_031601 R.norvegicus Ciita 85483   NP_445981 92
H.sapiens CIITA 4261 Gene Info NP_000237 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)