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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col3a1, Collagen, type III, alpha 1
Sequence ID:NM_009930
Entrez Gene ID:12825
Ensembl ID:ENSMUSG00000026043

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C1.1|1 25.0

Chromosomal Position (from UCSC)

Chromosomal Position:1: 45311630 - 45328904

 Exon Info From UCSC:
NM_009930

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5705762Full LengthBC058724collagen, type III, alpha 1
5720872Full LengthBC052398collagen, type III, alpha 1
6418299Full LengthBC043089collagen, type III, alpha 1
2812464IncompleteBC028248collagen, type III, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034060  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009930 NP_034060 Q7TT32
P08121
VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
M18933 AAA37338 P08121
BC028248 AAH28248 Q8K173
BC043089 AAH43089 Q3TVI5
P08121
BC052398 AAH52398 Q7TT32
BC058724 AAH58724 Q3TVI5
P08121
AK013329 BAB28793 Q9CSB7
AK019448 BAB31724 P08121
AK029451 BAC26454 Q8BMR6
AK041115 BAC30826 Q8BLW4
AK048546 BAC33370 Q8BKY2
AK079113 BAC37545 Q8BJU6
AK220558 BAD90325 Q5DTG2
AK147542 BAE27985 Q3UH72
AK157762 BAE34185 Q3TVI5
P08121
AK159868 BAE35442 Q3TW25
AK160107 BAE35633 Q3TVI5
P08121

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col3a1 NP_034060 R.norvegicus Col3a1 84032   NP_114474 97
H.sapiens COL3A1 1281 Gene Info NP_000081 91
A.thaliana AT1G15830 838153   NP_173035 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)