Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Canx, calnexin
Sequence ID:NM_001110499
NM_001110500
NM_007597
Entrez Gene ID:12330
Ensembl ID:ENSMUSG00000020368

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.3|11 30.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 50294468 - 50295526

 Exon Info From UCSC:
NM_001110499
NM_001110500
NM_007597

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2582119Full LengthBC040244calnexin
3497769Full LengthBC012408calnexin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031623  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001110499 NP_001103969    
NM_001110500 NP_001103970    
NM_007597 NP_031623 Q5SUC3
P35564
Calreticulin

Related Sequences

 
mRNAGenPeptSwissProt
L18888 AAA21014 Q5SUC3
P35564
L23865 AAA62450 P35564
BC012408 AAH12408 Q5SUC3
P35564
BC040244 AAH40244 Q5SUC3
P35564
AK084175 BAC39133 Q5SUC3
P35564
AK159298 BAE34971 Q3TXE5
AK165508 BAE38226 Q5SUC3
P35564
AK166649 BAE38916 Q5SUC3
P35564

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Canx NP_001103969 R.norvegicus Canx 29144   NP_742005 98
H.sapiens CANX 821 Gene Info NP_001019820 93
S.pombe cnx1 2543041   NP_593612 54
N.crassa NCU09265 3880849   XP_964700 54
A.thaliana AT5G07340 830625   NP_001190249 51
A.thaliana CNX1 836301   NP_200987 51
C.elegans cnx-1 176390   NP_499176 43
S.cerevisiae CNE1 851241   NP_009343 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta