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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lsm4, LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_015816
Entrez Gene ID:50783
Ensembl ID:ENSMUSG00000031848

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 B3.3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 70673391 - 70678752

NM_015816 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12277319712973197355
2282697320045373200494
2703687320167673201774
3695497320185273202032
5509427320225873202650

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4024321Full LengthBC026747LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056631  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015816 NP_056631 Q9QXA5 LSM

Related Sequences

 
mRNAGenPeptSwissProt
BC026747 AAH26747 Q9CY46
AK003847 BAB23033 Q9D181
AK010910 BAB27261 Q9CY46
AK089028 BAC40708 Q9CY46
AK143470 BAE25390 Q9CY46
AK167784 BAE39816 Q9CY46
AJ249439 CAB65729 Q9QXA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lsm4 NP_056631 R.norvegicus Lsm4 290647   NP_001099543 100
H.sapiens LSM4 25804 Gene Info NP_036453 97
D.melanogaster CG17768 3772012   NP_001188778 77
A.gambiae AgaP_AGAP009687 1279076   XP_318746 74
A.thaliana emb1644 832834   NP_198124 74
C.elegans lsm-4 174193   NP_495514 68
P.falciparum PF11_0524 810633   XP_001347757 61
N.crassa NCU07683 3878464   XP_962325 59
S.pombe lsm4 2540475   NP_596279 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)