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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx7, Syntaxin 7
Sequence ID:NM_016797
Entrez Gene ID:53331
Ensembl ID:ENSMUSG00000019998

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10|10 A3

Chromosomal Position (from UCSC)

Chromosomal Position:10: 24149328 - 24188284

NM_016797 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14102386912223869531
4115602387504023875189
5616302389697123897040
6317242389892223899015
7258622389973123899868
8639152390066823900720
91610122390132323901419
101310852390257423902646
108611682390479223904874
116925002390743323908764

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130400Full LengthBC132123syntaxin 7
40130402Full LengthBC132125syntaxin 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058077  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016797 NP_058077 Q8BH40 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
AF056323 AAC15971 O70439
BC132123 AAI32124 Q8BH40
BC132125 AAI32126 Q8BH40
AB019212 BAA90699 Q9JMJ6
AK002867 BAB22416 Q9DCE1
AK082927 BAC38695 Q8BH40
AK142742 BAE25180 Q8BH40
AK158923 BAE34729 Q8BH40
AK166822 BAE39048 Q8BH40
AK169822 BAE41392 Q8BH40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx7 NP_058077 H.sapiens STX7 8417 Gene Info NP_003560 95
R.norvegicus Stx7 60466   NP_068641 95
A.gambiae AgaP_AGAP005543 1276226   XP_315543 44
D.melanogaster Syx7 36173   NP_730632 43
A.thaliana SYP23 827494   NP_001078403 34
A.thaliana VAM3 834730   NP_568671 33
N.crassa NCU06777 3879828   XP_963618 30
S.pombe pep12 2540289   NP_595100 27
S.cerevisiae PEP12 854201   NP_014679 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)