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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Xrcc5, X-ray repair complementing defective repair in Chinese hamster cells 5
Sequence ID:NM_009533
Entrez Gene ID:22596
Ensembl ID:ENSMUSG00000026187

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 E|1 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 72307525 - 72394759

 Exon Info From UCSC:
NM_009533

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30008031Full LengthBC051660X-ray repair complementing defective repair in Chinese hamster cells 5
2647262IncompleteBC029218X-ray repair complementing defective repair in Chinese hamster cells 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009533 NP_033559 P27641 Ku
Ku_C
Ku_N

Related Sequences

 
mRNAGenPeptSwissProt
AF166486 AAD49720 P27641
BC029218 AAH29218 P27641
BC051660 AAH51660 P27641
AK010416 BAB26920 Q9CRI5
AK081633 BAC38276 P27641
AK165470 BAE38207 P27641
AK167312 BAE39415 P27641
AK168913 BAE40726 P27641
AK169838 BAE41402 P27641
X66323 CAA46999 P27641

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Xrcc5 NP_033559 R.norvegicus Xrcc5 363247   NP_803154 95
H.sapiens XRCC5 7520 Gene Info NP_066964 79
N.crassa NCU00077 3872525   XP_956387 31
A.thaliana KU80 841223   NP_564520 29
A.gambiae AgaP_AGAP009910 1279324   XP_319031 28
S.pombe pku80 2541045   NP_596791 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta