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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Shfm1, split hand/foot malformation (ectrodactyly) type 1
Sequence ID:NM_009169
Entrez Gene ID:20422
Ensembl ID:ENSMUSG00000042541

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6|6 A2

Chromosomal Position (from UCSC)

Chromosomal Position:6: 6557297 - 6578607

NM_009169 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121765082746508490
21831165104076510500
31249165284786528657

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5251089Full LengthBC023490split hand/foot malformation (ectrodactyly) type 1
6412144Full LengthBC058117split hand/foot malformation (ectrodactyly) type 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033195  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009169 NP_033195 P60897
Q3TV35
DSS1_SEM1

Related Sequences

 
mRNAGenPeptSwissProt
U41626 AAA91180 P60897
Q3TV35
BC023490 AAH23490 P60897
Q3TV35
BC058117 AAH58117 P60897
Q3TV35
AK160432 BAE35785 P60897
Q3TV35
AK161690 BAE36534 P60897
Q3TV35
AK167914 BAE39921 P60897
Q3TV35

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Shfm1 NP_033195 H.sapiens SHFM1 7979 Gene Info NP_006295 100
R.norvegicus Shfm1 680532   NP_001119562 100
A.gambiae AgaP_AGAP003851 1271588   XP_310410 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)