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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ifna12, Interferon alpha 12
Sequence ID:NM_177361
Entrez Gene ID:242519
Ensembl ID:ENSMUSG00000073811

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C4|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88602579 - 88603376

NM_177361 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17978824848388249279

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40049569Full LengthBC104352interferon alpha 12
40049571Full LengthBC104353interferon alpha 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796335  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177361 NP_796335 Q80SS5 Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC104352 AAI04353 Q80SS5
BC104353 AAI04354 Q80SS5
AY190046 AAO38687 Q80SS5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ifna12 NP_796335 M.musculus Ifna1 15962 Gene Info NP_034632 90
M.musculus Ifna6 15969 Gene Info NP_996754 89
M.musculus Ifna14 404549 Gene Info NP_996858 89
M.musculus Gm12597 242517 Gene Info NP_996753 88
M.musculus Ifna13 230396 Gene Info NP_796321 88
M.musculus Ifnab 15974 Gene Info NP_032362 87
M.musculus Ifna7 15970 Gene Info NP_032360 87
M.musculus Ifna11 15964 Gene Info NP_032359 86
M.musculus Ifna5 15968 Gene Info NP_034635 86
M.musculus Ifna9 15972 Gene Info NP_034637 85
M.musculus Ifna2 15965 Gene Info NP_034633 85
M.musculus Gm13280 230398 Gene Info NP_996750 83
R.norvegicus LOC680208 680208   XP_001056120 78
R.norvegicus Ifna5 690894   XP_001076062 78
R.norvegicus RGD1561246 502959   XP_578464 76
H.sapiens IFNA13 3447 Gene Info NP_008831 62
H.sapiens IFNA1 3439 Gene Info NP_076918 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)