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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hcrtr1, hypocretin (orexin) receptor 1
Sequence ID:NM_001163027
NM_198959
Entrez Gene ID:230777
Ensembl ID:ENSMUSG00000028778

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 130130912 - 130135888

 Exon Info From UCSC:
NM_001163027
NM_198959

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40058834Full LengthBC119583hypocretin (orexin) receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_945197  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163027 NP_001156499    
NM_198959 NP_945197 P58307 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC119582 AAI19583 Q0VDP6
BC119583 AAI19584 P58307
AF394596 AAK71326 P58307
AY255599 AAO85111 P58307
AY336083 AAR01326 P58307
AK140137 BAE24252 P58307

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hcrtr1 NP_945197 R.norvegicus Hcrtr1 25593   NP_037196 99
H.sapiens HCRTR1 3061 Gene Info NP_001516 94
C.elegans W05B5.2 189211   NP_493283 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)