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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ifna13, interferon alpha 13
Sequence ID:NM_177347
Entrez Gene ID:230396
Ensembl ID:ENSMUSG00000063376

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C4|4 42.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88643640 - 88644459

NM_177347 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18198828954488290362

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129647Full LengthBC120724interferon alpha 13
40129673Full LengthBC120750interferon alpha 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796321  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177347 NP_796321 Q80SU4 Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC120724 AAI20725 Q80SU4
BC120750 AAI20751 Q80SU4
AY190047 AAO38688 Q80SU4
AY266684 AAP79990 Q56VR2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ifna13 NP_796321 M.musculus Ifna6 15969 Gene Info NP_996754 89
M.musculus Ifna1 15962 Gene Info NP_034632 88
M.musculus Ifna12 242519 Gene Info NP_796335 88
M.musculus Ifna5 15968 Gene Info NP_034635 87
M.musculus Ifnab 15974 Gene Info NP_032362 87
M.musculus Ifna14 404549 Gene Info NP_996858 84
M.musculus Ifna7 15970 Gene Info NP_032360 84
M.musculus Gm12597 242517 Gene Info NP_996753 84
M.musculus Ifna9 15972 Gene Info NP_034637 84
M.musculus Ifna11 15964 Gene Info NP_032359 82
M.musculus Gm13280 230398 Gene Info NP_996750 81
M.musculus Ifna2 15965 Gene Info NP_034633 80
R.norvegicus Ifna5 690894   XP_001076062 79
R.norvegicus LOC680208 680208   XP_001056120 79
R.norvegicus RGD1561246 502959   XP_578464 78
H.sapiens IFNA1 3439 Gene Info NP_076918 65
H.sapiens IFNA13 3447 Gene Info NP_008831 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)