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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sypl, synaptophysin-like protein
Sequence ID:NM_013635
NM_198710
Entrez Gene ID:19027
Ensembl ID:ENSMUSG00000020570

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 B2|12 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 32954243 - 32956801

 Exon Info From UCSC:
NM_013635
NM_198710

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6770686Full LengthBC060971synaptophysin-like protein
5040660IncompleteBC048846synaptophysin-like protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_942003  NP_038663  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013635 NP_038663 O09117 MARVEL
NM_198710 NP_942003 Q3TVX7 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC060971 AAH60971 O09117
AK030703 BAC27089 Q8CDB7
AK049545 BAC33803 O09117
Q3TVX7
AK049556 BAC33808 O09117
AK052556 BAC35036 O09117
AK154051 BAE32341 Q3U4T9
AK159382 BAE35037 Q3TVX7
AK159929 BAE35491 Q3TVX7
AK167617 BAE39670 Q3TVX7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sypl NP_038663 R.norvegicus Sypl1 366595   NP_001014285 91
H.sapiens SYPL1 6856 Gene Info NP_006745 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)