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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rxra, retinoid X receptor alpha
Sequence ID:NM_011305
Entrez Gene ID:20181
Ensembl ID:ENSMUSG00000015846

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2 17.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 27759893 - 27763319

NM_011305 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12602753272027532979
2615262759281827593083
5276772759657227596722
6788572759728327597462
85810272760413127604300
102811572760783127607960
115812902760974227609874
129113822761171827611809
138314882761328027613385
148952672761506027618838

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861822Full LengthBC138800retinoid X receptor alpha
8861824Full LengthBC138802retinoid X receptor alpha
5124945IncompleteBC049982retinoid X receptor alpha
5252419IncompleteBC039639retinoid X receptor alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035435  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011305 NP_035435 P28700 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
M84817 AAA40080 P28700
U77683 AAB36777 Q6LC96
U77684 AAB36778 Q6LC96
BC138800 AAI38801 A2AJP1
BC138802 AAI38803 A2AJP1
AK144675 BAE26004 Q3UMU4
X66223 CAA46962 P28700

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rxra NP_035435 R.norvegicus Rxra 25271   NP_036937 99
H.sapiens RXRA 6256 Gene Info NP_002948 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta