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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vcp, valosin containing protein
Sequence ID:NM_009503
Entrez Gene ID:269523
Ensembl ID:ENSMUSG00000028452

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4 23.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 42979963 - 42984568

 Exon Info From UCSC:
NM_009503

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6418662Full LengthBC043053valosin containing protein
6810751Full LengthBC049114valosin containing protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033529  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009503 NP_033529   AAA
CDC48_N

Related Sequences

 
mRNAGenPeptSwissProt
BC043053 AAH43053 Q01853
BC049114 AAH49114 Q01853
AK028264 BAC25849 Q01853
AK030751 BAC27119 Q01853
AK083821 BAC39028 Q8BNF8
AK149931 BAE29175 Q01853
AK151109 BAE30119 Q01853
AK151418 BAE30383 Q01853
AK153249 BAE31840 Q01853
AK159177 BAE34876 Q01853
AK159509 BAE35141 Q01853
AK167794 BAE39824 Q01853
AK169140 BAE40919 Q01853
Z14044 CAA78412 Q01853

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vcp NP_033529 H.sapiens VCP 7415 Gene Info NP_009057 100
R.norvegicus Vcp 116643   NP_446316 100
A.gambiae AgaP_AGAP005630 1276315   XP_315644 85
D.melanogaster TER94 36040   NP_001097249 84
C.elegans cdc-48.2 174309   NP_495705 80
C.elegans cdc-48.1 174624   NP_496273 79
A.thaliana CDC48 820142   NP_187595 78
A.thaliana AT5G03340 831870   NP_568114 78
A.thaliana AT3G53230 824489   NP_190891 78
N.crassa NCU00018 3873143   XP_957005 74
S.pombe cdc48 2542744   NP_593287 72
S.cerevisiae CDC48 851431   NP_010157 71
P.falciparum PFF0940c 3885942   XP_966179 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)