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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2afx, H2A histone family, member X
Sequence ID:NM_010436
Entrez Gene ID:15270
Ensembl ID:ENSMUSG00000049932

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A5.2|9 26.0

Chromosomal Position (from UCSC)

Chromosomal Position:9: 44334694 - 44335258

NM_010436 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
113594414279744144155

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3156946Full LengthBC010336H2A histone family, member X
3490058Full LengthBC005468H2A histone family, member X

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034566  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010436 NP_034566 P27661 Histone

Related Sequences

 
mRNAGenPeptSwissProt
BC005468 AAH05468 P27661
BC010336 AAH10336 P27661
X58069 CAA41099 P27661

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2afx NP_034566 R.norvegicus H2afx 500987   NP_001102761 99
H.sapiens H2AFX 3014 Gene Info NP_002096 97
S.pombe hta2 2542226   NP_594421 87
N.crassa NCU02437 3875589   XP_959442 85
S.pombe hta1 2539499   NP_588180 84
S.cerevisiae HTA2 852283   NP_009552 78
S.cerevisiae HTA1 851811   NP_010511 78
A.thaliana HTA12 831891   NP_001190208 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)