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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Snap23, synaptosomal-associated protein 23
Sequence ID:NM_001177792
NM_001177793
NM_009222
Entrez Gene ID:20619
Ensembl ID:ENSMUSG00000027287

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E5|2 61.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 120584267 - 120599447

 Exon Info From UCSC:
NM_001177792
NM_001177793
NM_009222

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30606358Full LengthBC070456synaptosomal-associated protein 23

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033248  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001177792 NP_001171263    
NM_001177793 NP_001171264    
NM_009222 NP_033248 O09044 SNAP-25
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
U73143 AAB53597 O09044
AF007169 AAB62932 O09044
BC070456 AAH70456 O09044
AB000822 BAA20345 O09044
AK017311 BAB30686 Q9D3L3
AK019162 BAB31577 O09044
AB007444 BAF91555 A2AKH4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snap23 NP_001171263 R.norvegicus Snap23 64630   NP_073180 98
H.sapiens SNAP23 8773 Gene Info NP_003816 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)