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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chid1, chitinase domain containing 1
Sequence ID:NM_001142681
NM_026522
Entrez Gene ID:68038
Ensembl ID:ENSMUSG00000025512

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F5|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 141495338 - 141539804

 Exon Info From UCSC:
NM_001142681
NM_026522

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2647540Full LengthBC006876chitinase domain containing 1
6591338Full LengthBC061063chitinase domain containing 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142681 NP_001136153    
NM_026522 NP_080798    

Related Sequences

 
mRNAGenPeptSwissProt
BC006876 AAH06876 Q922Q9
BC061063 AAH61063 Q922Q9
AK014071 BAB29142 Q922Q9
AK014141 BAB29176 Q9CRU8
AK050655 BAC34365 Q922Q9
AK160156 BAE35662 Q922Q9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chid1 NP_001136153 R.norvegicus Chid1 293628   NP_001041319 98
H.sapiens CHID1 66005 Gene Info NP_001136147 90
A.gambiae AgaP_AGAP008124 1277831   XP_317335 46
D.melanogaster CG8460 34115   NP_609190 43
A.thaliana AT4G01040 827924   NP_192013 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)