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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vdr, vitamin D receptor
Sequence ID:NM_009504
Entrez Gene ID:22337
Ensembl ID:ENSMUSG00000022479

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 97854426 - 97908296

NM_009504 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
132059768485797688061
320633229768921997689335
332334749768952897689679
347536469769754797697718
364737529769974897699853
375339379770007697700260
393840689770715497707284
406942169771522497715371
421742929771884397718918
429343549773866597738726

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3710866Full LengthBC006716vitamin D receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033530  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009504 NP_033530 P48281 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
BC006716 AAH06716 P48281
D31969 BAA06737 Q3U0J7
P48281
AK030339 BAC26911 P48281
AK154647 BAE32738 P48281
AK156789 BAE33856 Q3U0J7
P48281
CT010294 CAJ18502 Q4FJV8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vdr NP_033530 R.norvegicus Vdr 24873   NP_058754 96
H.sapiens VDR 7421 Gene Info NP_001017536 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta