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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcl3, chemokine (C-X-C motif) ligand 3
Sequence ID:NM_203320
Entrez Gene ID:330122
Ensembl ID:ENSMUSG00000029379

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 90786100 - 90788086

NM_203320 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11479121512891215274
1482719121536791215490
2723559121560991215692
35610139121645891217115

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40126333Full LengthBC117014chemokine (C-X-C motif) ligand 3
40126335Full LengthBC117016chemokine (C-X-C motif) ligand 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_976065  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_203320 NP_976065 Q6W5C0 IL8

Related Sequences

 
mRNAGenPeptSwissProt
BC117014 AAI17015 Q6W5C0
BC117016 AAI17017 Q6W5C0
AY311403 AAQ86936 Q6W5C0
AK144158 BAE25738 Q6W5C0
AK150314 BAE29460 Q6W5C0
AK154334 BAE32520 Q6W5C0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl3 NP_976065 R.norvegicus Cxcl3 171551   NP_612531 85
H.sapiens CXCL1 2919 Gene Info NP_001502 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)