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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pdcd6, programmed cell death 6
Sequence ID:NM_011051
Entrez Gene ID:18570
Ensembl ID:ENSMUSG00000021576

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 C1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 74303127 - 74317247

NM_011051 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19287444056874441495
92910387444298874443097
103911977444713174447289
119812427444911574449159
124313047445377774453838
130515247445455474454773

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3156800Full LengthBC040079programmed cell death 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035181  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011051 NP_035181 P12815 efhand

Related Sequences

 
mRNAGenPeptSwissProt
U49112 AAB38108 P12815
BC040079 AAH40079 P12815
AK008610 BAB25775 P12815
AK028223 BAC25823 P12815
AK078044 BAC37107 Q8C5M4
AK147979 BAE28264 Q3UGE5
AK150335 BAE29477 P12815
X14938 CAA33064 P12815

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdcd6 NP_035181 H.sapiens PDCD6 10016 Gene Info NP_037364 99
R.norvegicus Pdcd6 308061   NP_001100922 99
D.melanogaster Alg-2 3355106   NP_001104459 69
C.elegans M04F3.4 187448   NP_491447 59
N.crassa NCU02738 3881263   XP_965123 45
S.cerevisiae PEF1 852949   NP_011572 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)