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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col2a1, collagen, type II, alpha 1
Sequence ID:NM_001113515
NM_031163
Entrez Gene ID:12824
Ensembl ID:ENSMUSG00000022483

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F1|15 54.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 97975602 - 97986787

 Exon Info From UCSC:
NM_001113515
NM_031163

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6312433Full LengthBC051383collagen, type II, alpha 1
6315379Full LengthBC052326collagen, type II, alpha 1
30537724Full LengthBC082331collagen, type II, alpha 1
4506267IncompleteBC030913collagen, type II, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112440  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001113515 NP_001106987    
NM_031163 NP_112440 P28481 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
BC030913 AAH30913 P28481
BC051383 AAH51383 P28481
BC052326 AAH52326 P28481
BC082331 AAH82331 P28481
AK028295 BAC25865 P28481

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col2a1 NP_112440 R.norvegicus Col2a1 25412   NP_037061 98
H.sapiens COL2A1 1280 Gene Info NP_001835 95
A.gambiae AgaP_AGAP011620 1281010   XP_320884 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)