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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Msh5, mutS homolog 5 (E. coli)
Sequence ID:NM_001146215
NM_013600
Entrez Gene ID:17687
Ensembl ID:ENSMUSG00000007035

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35028604 - 35046726

 Exon Info From UCSC:
NM_001146215
NM_013600

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055725Full LengthBC141113mutS homolog 5 (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038628  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146215 NP_001139687    
NM_013600 NP_038628 Q9QUM7 MutS_V
MutS_IV
MutS_III

Related Sequences

 
mRNAGenPeptSwissProt
AF107352 AAD52102 Q9QUM7
AF146227 AAF07881 Q9QUM7
BC141113 AAI41114 B2RUF1
AK017308 BAB30683 Q9D3L5
AK042083 BAE20621 Q3V3B7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Msh5 NP_001139687 R.norvegicus Msh5 294252   NP_997701 95
H.sapiens MSH5 4439 Gene Info NP_751897 90
N.crassa NCU09384 3879979   XP_963830 37
A.thaliana MSH5 821593   NP_188683 33
A.gambiae AgaP_AGAP002642 1273320   XP_312286 32
C.elegans msh-5 178268   NP_502531 31
S.cerevisiae MSH5 851401   NP_010127 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)