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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg4c, autophagy related 4C, cysteine peptidase
Sequence ID:NM_001145967
NM_175029
Entrez Gene ID:242557
Ensembl ID:ENSMUSG00000028550

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C6|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 99192139 - 99194396

 Exon Info From UCSC:
NM_001145967
NM_175029

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6827140Full LengthBC058981autophagy-related 4C (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_778194  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145967 NP_001139439    
NM_175029 NP_778194 Q811C2 Peptidase_C54

Related Sequences

 
mRNAGenPeptSwissProt
BC058981 AAH58981 Q811C2
AK134838 BAE22307 Q3UYA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg4c NP_001139439 R.norvegicus Atg4c 313391   NP_001101418 97
H.sapiens ATG4C 84938 Gene Info NP_116241 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)