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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rer1, RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
Sequence ID:NM_026395
Entrez Gene ID:67830
Ensembl ID:ENSMUSG00000029048

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 155074111 - 155086297

NM_026395 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1917154448220154449136
9181053154449697154449832
10541132154450820154450898
11331232154452602154452701
12331337154454907154455011
13381425154456775154456862
14261518154460313154460405

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4036721Full LengthBC029189RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080671  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026395 NP_080671 Q9CQU3 Rer1

Related Sequences

 
mRNAGenPeptSwissProt
BC029189 AAH29189 Q9CQU3
AK002550 BAB22181 Q9CQU3
AK003682 BAB22935 Q9CQU3
AK013262 BAB28755 Q9CQU3
AK078396 BAC37253 Q9CQU3
AK168192 BAE40152 Q9CQU3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rer1 NP_080671 R.norvegicus Rer1 298675   NP_001034101 100
H.sapiens RER1 11079 Gene Info NP_008964 96
A.gambiae AgaP_AGAP011996 1280675   XP_320536 71
D.melanogaster CG11857 43042   NP_001138110 66
N.crassa NCU06447 3873507   XP_957338 64
C.elegans rer-1 174410   NP_495878 62
A.thaliana ATRER1A 830077   NP_195633 59
A.thaliana RER1B 816698   NP_179754 56
S.pombe rer1 2541774   NP_594831 53
S.cerevisiae RER1 850354   NP_009925 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)