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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pcif1, PDX1 C-terminal inhibiting factor 1
Sequence ID:NM_146129
Entrez Gene ID:228866
Ensembl ID:ENSMUSG00000039849

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 164879476 - 164883215

 Exon Info From UCSC:
NM_146129

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4241283Full LengthBC031431PDX1 C-terminal inhibiting factor 1
4164678IncompleteBC037706RIKEN cDNA F730014I05 gene
6742052IncompleteBC060988RIKEN cDNA F730014I05 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666241  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146129 NP_666241 Q542C3
P59114
WW
NM_199027 NP_950192 A2A5K6  

Related Sequences

 
mRNAGenPeptSwissProt
BC031431 AAH31431 Q542C3
P59114
BC062921 AAH62921 Q6P5F4
BC151013 AAI51014 A2A5K6
BC157954 AAI57955 A2A5K6
AK007785 BAC25187 Q8C1Q2
AK041830 BAC31078 Q8BY58
AK089358 BAC40853 Q542C3
P59114
AK150740 BAE29814 Q3UC00
AK157577 BAE34126 A2A5K6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pcif1 NP_666241 R.norvegicus Pcif1 362269   NP_001102075 98
H.sapiens PCIF1 63935 Gene Info NP_071387 95
D.melanogaster CG11399 40295   NP_649254 47
A.gambiae AgaP_AGAP011933 1280736   XP_320600 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)