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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox4, SRY-box containing gene 4
Sequence ID:NM_009238
Entrez Gene ID:20677
Ensembl ID:ENSMUSG00000076431

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 A3-A5|13 20.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 28949043 - 28953698

NM_009238 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1729692904259829045550

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6822618Full LengthBC052736SRY-box containing gene 4
5708894IncompleteBC060669SRY-box containing gene 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033264  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009238 NP_033264 Q06831 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U70440 AAC52858 Q06831
BC052736 AAH52736 Q06831
AK028989 BAC26228 Q8CE56
AK051540 BAC34667 Q8BQ53
AK053840 BAC35551 Q8BPK5
AK153771 BAE32179 Q3U5A1
X70298 CAA49779 Q06831

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox4 NP_033264 R.norvegicus Sox4 364712   XP_344595 99
H.sapiens SOX4 6659 Gene Info NP_003098 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)