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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm4d, lysine (K)-specific demethylase 4D
Sequence ID:XM_003946284
NM_173433
Entrez Gene ID:244694
Ensembl ID:ENSMUSG00000053914

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A1|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 14462556 - 14500482

NM_173433 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
122871426702414269310
228826621430455114304925

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062716Full LengthBC156878jumonji domain containing 2D
40056755IncompleteBC112372jumonji domain containing 2D
100016117BC152815jumonji domain containing 2D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775609  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173433 NP_775609 Q3U2K5 JmjC

Related Sequences

 
mRNAGenPeptSwissProt
BC112372 AAI12373 Q3U2K5
BC152815 AAI52816 Q3U2K5
BC156878 AAI56879  
AK030020 BAC26740 Q3U2K5
AK155227 BAE33135 Q3U2K5
XM_003946284 XP_003946333  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm4d NP_775609 R.norvegicus Kdm4d 689582   NP_001073180 90
H.sapiens KDM4D 55693 Gene Info NP_060509 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)