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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sptlc1, serine palmitoyltransferase, long chain base subunit 1
Sequence ID:NM_009269
Entrez Gene ID:268656
Ensembl ID:ENSMUSG00000021468

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 53333639 - 53377365

 Exon Info From UCSC:
NM_009269

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6391985Full LengthBC046323serine palmitoyltransferase, long chain base subunit 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033295  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009269 NP_033295 O35704 EC 2.3.1.50 Aminotran_1_2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF003823 AAC02264 O35704 EC 2.3.1.50
BC046323 AAH46323 O35704 EC 2.3.1.50
AK053207 BAC35310 O35704 EC 2.3.1.50
AK079578 BAC37690 O35704 EC 2.3.1.50
AK084391 BAC39172 O35704 EC 2.3.1.50
AK084445 BAC39185 O35704 EC 2.3.1.50
AK089030 BAC40709 Q8C295  
AK028713 BAE20444 Q3V3Z5  
AK043064 BAE20637 Q3V3A0  
AK161140 BAE36210 Q3TTW4  
AK161811 BAE36587 Q3TST8  
X95641 CAA64897 O35704 EC 2.3.1.50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sptlc1 NP_033295 R.norvegicus Sptlc1 361213   NP_001101876 97
H.sapiens SPTLC1 10558 Gene Info NP_006406 92
A.gambiae AgaP_AGAP010427 1272620   XP_311520 53
C.elegans sptl-1 173389   NP_001021978 52
D.melanogaster Spt-I 36448   NP_610842 52
A.thaliana LCB1 829800   NP_001031796 45
S.pombe SPBC18E5.02c 2540820   NP_595848 38
N.crassa NCU06870 3874126   XP_957979 38
S.cerevisiae LCB1 855342   NP_014025 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)