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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prf1, perforin 1 (pore forming protein)
Sequence ID:NM_011073
Entrez Gene ID:18646
Ensembl ID:ENSMUSG00000037202

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B4|10 36.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 61297835 - 61304263

NM_011073 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1196076058360760601
205916076265860763229
59220546076554860767010

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860981Full LengthBC137962perforin 1 (pore forming protein)
40130577Full LengthBC132300perforin 1 (pore forming protein)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035203  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011073 NP_035203 P10820 C2
MACPF

Related Sequences

 
mRNAGenPeptSwissProt
M23182 AAA39910 P10820
BC132300 AAI32301 A2RSY7
P10820
BC137962 AAI37963 A2RSY7
X12760 CAA31251 P10820
X60165 CAA42731 P10820

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prf1 NP_035203 R.norvegicus Prf1 50669   NP_059026 86
H.sapiens PRF1 5551 Gene Info NP_001076585 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta