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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nlrp1a, NLR family, pyrin domain containing 1A
Sequence ID:NM_001004142
Entrez Gene ID:195046
Ensembl ID:ENSMUSG00000069830

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B4|11 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 71122958 - 71144702

 Exon Info From UCSC:
NM_001004142

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100061969BC156396NLR family, pyrin domain containing 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001004142  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001004142 NP_001004142 Q67EY4 CARD
NACHT

Related Sequences

 
mRNAGenPeptSwissProt
BC156396 AAI56397  
AY355339 AAR14736 Q67EY4
DQ117601 AAZ40527 Q2LKU9
AK157034 BAE33940 Q3U0B5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nlrp1a NP_001004142 M.musculus Nlrp1b 637515 Gene Info NP_001155886 78
R.norvegicus Nlrp1b 691998   XP_001080760 76
H.sapiens NLRP1 22861 Gene Info NP_127497 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)