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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hspa4, heat shock protein 4
Sequence ID:NM_008300
Entrez Gene ID:15525
Ensembl ID:ENSMUSG00000020361

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.3|11 29.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 53280639 - 53300419

 Exon Info From UCSC:
NM_008300

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3494648Full LengthBC003770heat shock protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032326  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008300 NP_032326 Q99L75 HSP70

Related Sequences

 
mRNAGenPeptSwissProt
BC003770 AAH03770 Q99L75
D85904 BAA12914 Q61316
AK054010 BAC35620 Q8C6R3
AK220167 BAD90352 Q571M2
AK134082 BAE22005 Q3UZ53
AK155305 BAE33178 Q3U2G2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hspa4 NP_032326 R.norvegicus Hspa4 266759   NP_705893 98
H.sapiens HSPA4 3308 Gene Info NP_002145 96
S.pombe pss1 3361514   NP_001018245 47
N.crassa NCU05269 3877907   XP_961759 43
A.thaliana HSP91 844333   NP_178111 42
S.cerevisiae SSE1 855998   NP_015219 42
A.thaliana AT1G79920 844332   NP_178110 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)