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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Opa3, optic atrophy 3
Sequence ID:NM_207525
Entrez Gene ID:403187
Ensembl ID:ENSMUSG00000052214

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 19228382 - 19246636

NM_207525 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11961981373719813932
19722601983010219832165

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6404450Full LengthBC094601optic atrophy 3 (human)
40130586Full LengthBC132309optic atrophy 3 (human)
40130588Full LengthBC132311optic atrophy 3 (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_997408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_207525 NP_997408 Q505D7 OPA3

Related Sequences

 
mRNAGenPeptSwissProt
BC094601 AAH94601 Q505D7
BC132309 AAI32310 Q505D7
BC132311 AAI32312 Q505D7
AK052774 BAC35141 Q505D7
AK133480 BAE21678 Q505D7
AK154960 BAE32955 Q505D7
AK164755 BAE37900 Q505D7
AK170977 BAE42155 Q505D7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Opa3 NP_997408 H.sapiens OPA3 80207 Gene Info NP_001017989 77
D.melanogaster CG13601 42826   NP_651192 46
A.gambiae AgaP_AGAP001401 1281776   XP_321733 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)