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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clec7a, C-type lectin domain family 7, member a
Sequence ID:NM_020008
Entrez Gene ID:56644
Ensembl ID:ENSMUSG00000079293

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 129461590 - 129472772

NM_020008 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11577129411608129413184
15781696129415472129415590
16971848129417534129417685
18491983129418886129419020
19842082129420916129421014
20832277129422600129422794

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5036647Full LengthBC027742C-type lectin domain family 7, member a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064392  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020008 NP_064392   Lectin_C
Ly49

Related Sequences

 
mRNAGenPeptSwissProt
AF262985 AAF72710 Q6QLQ4
BC027742 AAH27742 Q6QLQ4
AY534909 AAS37670 Q6QLQ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clec7a NP_064392 R.norvegicus Clec7a 502902   XP_578404 86
H.sapiens CLEC7A 64581 Gene Info NP_922938 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)