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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Msr1, macrophage scavenger receptor 1
Sequence ID:NM_001113326
NM_031195
Entrez Gene ID:20288
Ensembl ID:ENSMUSG00000025044

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 A4|8 20.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 39581684 - 39632825

 Exon Info From UCSC:
NM_001113326
NM_031195

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3594142Full LengthBC003814macrophage scavenger receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112472  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001113326 NP_001106797 P30204  
NM_031195 NP_112472   Collagen
Macscav_rec

Related Sequences

 
mRNAGenPeptSwissProt
M59445 AAA37464 P30204
M59446 AAA37465 P30204
L04274 AAA39747 P30204
L04275 AAA39748 P30204
AF203781 AAF14001 P30204
BC003814 AAH03814 P30204
Q3U2C3
D13382 BAA02650 P30204
AK028480 BAC25973 Q8CED7
AK089178 BAC40779 P30204
Q3U2C3
AK150518 BAE29630 Q8CED7
AK151403 BAE30370 Q8CED7
AK151855 BAE30744 Q8CED7
AK154806 BAE32842 Q3U3E5
AK155362 BAE33218 Q3U2C3
AK155589 BAE33337 Q8CED7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Msr1 NP_001106797 R.norvegicus Msr1 498638   XP_573919 85
H.sapiens MSR1 4481 Gene Info NP_619729 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)