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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vax1, ventral anterior homeobox containing gene 1
Sequence ID:NM_009501
Entrez Gene ID:22326
Ensembl ID:ENSMUSG00000006270

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D3|19 53.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 59166186 - 59170029

NM_009501 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15885924067659241263
5897765924296059243147
77710175924427859244518

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40044698Full LengthBC111818ventral anterior homeobox containing gene 1
40044688IncompleteBC119455ventral anterior homeobox containing gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033527  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009501 NP_033527 Q2NKI2 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF064554 AAC36319 Q2NKI2
BC111818 AAI11819 Q2NKI2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vax1 NP_033527 R.norvegicus Vax1 64571   NP_072158 99
H.sapiens VAX1 11023 Gene Info NP_001106175 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)