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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hnrnpa1, heterogeneous nuclear ribonucleoprotein A1
Sequence ID:NM_001039129
NM_010447
Entrez Gene ID:15382
Ensembl ID:ENSMUSG00000046434

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15 61.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 103240454 - 103246690

 Exon Info From UCSC:
NM_001039129
NM_010447

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6308746Full LengthBC080675heterogeneous nuclear ribonucleoprotein A1
6402927Full LengthBC089340heterogeneous nuclear ribonucleoprotein A1
6403376Full LengthBC092395heterogeneous nuclear ribonucleoprotein A1
6511966Full LengthBC083136heterogeneous nuclear ribonucleoprotein A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034577  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039129 NP_001034218    
NM_010447 NP_034577 P49312 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M99167 AAA37633 P49312
BC080675 AAH80675 P49312
BC083136 AAH83136 P49312
BC089340 AAH89340 Q5EBP8
BC092395 AAH92395 Q5EBP8
D86728 BAA13161 P49312
D86729 BAA13162 P49312
AK007802 BAB25267 P49312
AK088308 BAC40273 P49312
AK131999 BAE20929 P49312
AK135391 BAE22518 P49312
AK146126 BAE26919 Q3UK83
AK146630 BAE27318 Q5EBP8
AK152684 BAE31416 Q3U7F3
AK161730 BAE36552 P49312
AK166901 BAE39104 P49312
AK166989 BAE39169 Q5EBP8
AK167161 BAE39302 P49312
AK167810 BAE39837 P49312
AK167811 BAE39838 Q3TIK8
AK167913 BAE39920 P49312
AK168420 BAE40333 P49312
AK168531 BAE40409 P49312
AK168733 BAE40574 Q5EBP8
AK169216 BAE40987 Q3TFB1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hnrnpa1 NP_001034218 H.sapiens HNRNPA1 3178 Gene Info NP_112420 100
A.gambiae AgaP_AGAP002374 3290608   XP_563821 57
D.melanogaster Hrb87F 48535   NP_001163602 54
D.melanogaster Hrb98DE 43385   NP_733252 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)