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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rps3, ribosomal protein S3
Sequence ID:NM_012052
Entrez Gene ID:27050
Ensembl ID:ENSMUSG00000030744

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F1|7 49.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 99478889 - 99483646

NM_012052 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21056106626406106627460
10571253106627783106627979
12541441106628385106628572
14421536106630206106630300
15371630106630770106630863
16311761106631079106631209
17621879106632101106632218

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2811930Full LengthBC010721ribosomal protein S3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036182  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012052 NP_036182 Q5YLW3
P62908
Ribosomal_S3_C
KH_2

Related Sequences

 
mRNAGenPeptSwissProt
U89414 AAC36521 O89068
BC010721 AAH10721 Q5YLW3
P62908
AK003181 BAB22624 Q5YLW3
P62908
AK010579 BAB27042 Q5YLW3
P62908
AK011655 BAB27761 Q9D0A2
AK012234 BAB28111 Q5YLW3
P62908
AK012314 BAB28159 Q9CZP6
AK051243 BAC34570 Q5YLW3
P62908
AK146165 BAE26946 Q3UK56
AK146796 BAE27438 Q5YLW3
P62908
AK148030 BAE28299 Q5YLW3
P62908
AK150479 BAE29595 Q3UCL7
AK159508 BAE35140 Q5YLW3
P62908
AK160526 BAE35844 Q5YLW3
P62908
AK164077 BAE37615 Q5YLW3
P62908
AK165174 BAE38059 Q5YLW3
P62908
AK166750 BAE38991 Q5YLW3
P62908
AK167210 BAE39337 Q5YLW3
P62908
AK167266 BAE39379 Q5YLW3
P62908
AK168845 BAE40668 Q5YLW3
P62908
X76772 CAA54167 Q5YLW3
P62908

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps3 NP_036182 H.sapiens RPS3 6188 Gene Info NP_000996 100
R.norvegicus Rps3 140654   NP_001009239 100
A.gambiae AgaP_AGAP001910 1281216   XP_321155 89
D.melanogaster RpS3 42761   NP_476632 84
A.thaliana AT3G53870 824554   NP_190955 82
A.thaliana AT2G31610 817719   NP_180719 82
A.thaliana AT5G35530 833518   NP_198403 76
C.elegans rps-3 175879   NP_498349 76
N.crassa NCU00489 3872321   XP_956174 75
S.pombe rps3 2539797   NP_596763 74
P.falciparum PF14_0627 812209   XP_001348801 70
S.cerevisiae RPS3 855543   NP_014221 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)