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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ctsb, cathepsin B
Sequence ID:NM_007798
Entrez Gene ID:13030
Ensembl ID:ENSMUSG00000021939

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 D1|14 28.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 63142876 - 63143135

NM_007798 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11016374130163741401
1022526375215263752302
2533386375280163752886
3394536375444463754558
4545726375524363755361
5736586375686963756954
6598026375718763757330
8039196375783563757951
92010486376057063760698
104947386376106863764757

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3500700Full LengthBC006656cathepsin B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031824  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007798 NP_031824 P10605 EC 3.4.22.1 Peptidase_C1
Propeptide_C1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M14222 AAA37494 P10605 EC 3.4.22.1
S69034 AAB20536 P10605 EC 3.4.22.1
BC006656 AAH06656 P10605 EC 3.4.22.1
AK083393 BAC38900 P10605 EC 3.4.22.1
AK147192 BAE27751 P10605 EC 3.4.22.1
AK149884 BAE29144 P10605 EC 3.4.22.1
AK151790 BAE30691 P10605 EC 3.4.22.1
AK159992 BAE35542 Q3TVS6  
AK167361 BAE39458 P10605 EC 3.4.22.1
AK170959 BAE42140 Q3TC17  
X54966 CAA38713 P10605 EC 3.4.22.1
Y18463 CAA77181 Q6LAF6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsb NP_031824 R.norvegicus Ctsb 64529   NP_072119 93
H.sapiens CTSB 1508 Gene Info NP_001899 79
A.gambiae AgaP_AGAP004533 1274679   XP_313835 60
D.melanogaster CG10992 32341   NP_572920 58
A.thaliana AT4G01610 826792   NP_567215 49
A.thaliana AT1G02300 839576   NP_563647 49
A.thaliana AT1G02305 839538   NP_563648 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)